Path with L1- Logistic Regression

Computes path on IRIS dataset.

Python source code: plot_logistic_path.py

print __doc__

# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# License: BSD Style.

from datetime import datetime
import numpy as np
import pylab as pl

from scikits.learn import linear_model
from scikits.learn import datasets
from scikits.learn.svm import l1_min_c

iris = datasets.load_iris()
X = iris.data
y = iris.target

X = X[y != 2]
y = y[y != 2]

X -= np.mean(X, 0)

################################################################################
# Demo path functions

cs = l1_min_c(X, y, loss='log') * np.logspace(0, 3)


print "Computing regularization path ..."
start = datetime.now()
clf = linear_model.LogisticRegression(C=1.0, penalty='l1', tol=1e-6)
coefs_ = [clf.fit(X, y, C=c).coef_.ravel().copy() for c in cs]
print "This took ", datetime.now() - start

coefs_ = np.array(coefs_)
pl.plot(np.log10(cs), coefs_)
ymin, ymax = pl.ylim()
pl.xlabel('log(C)')
pl.ylabel('Coefficients')
pl.title('Logistic Regression Path')
pl.axis('tight')
pl.show()